Diferenças
Aqui você vê as diferenças entre duas revisões dessa página.
| Ambos lados da revisão anteriorRevisão anteriorPróxima revisão | Revisão anterior | ||
| projetos:reproducibleresearch [2014/03/17 17:51] – [Reproducible Research] joel | projetos:reproducibleresearch [2014/03/17 18:04] (atual) – [Reproducible Research] joel | ||
|---|---|---|---|
| Linha 18: | Linha 18: | ||
| </ | </ | ||
| + | |||
| + | We can embbed those commands into a simple LaTeX file according to the example below : | ||
| + | |||
| + | < | ||
| + | \documentclass{article} | ||
| + | |||
| + | \title{Introduction to Reproducible Research in R} | ||
| + | \author{Bioinformatics Meeting} | ||
| + | |||
| + | |||
| + | \begin{document} | ||
| + | |||
| + | \maketitle | ||
| + | |||
| + | \section{Introduction} | ||
| + | |||
| + | This document contains a minimal example of reproducible research using R. | ||
| + | |||
| + | \section{Loading Data} | ||
| + | << | ||
| + | # loading data set | ||
| + | data(iris) | ||
| + | @ | ||
| + | |||
| + | |||
| + | \section{Summary of Data} | ||
| + | << | ||
| + | # summary of the data set | ||
| + | summary(iris) | ||
| + | @ | ||
| + | |||
| + | \section{A Box Plot} | ||
| + | << | ||
| + | # building a box plot | ||
| + | boxplot(iris$Sepal.Length~iris$Species) | ||
| + | @ | ||
| + | |||
| + | |||
| + | \section{A Table} | ||
| + | |||
| + | << | ||
| + | # loading xtable package | ||
| + | require(xtable) | ||
| + | |||
| + | # creating a table | ||
| + | tab< | ||
| + | |||
| + | # buiding a table with all data | ||
| + | print(xtable(tab)) | ||
| + | @ | ||
| + | |||
| + | \section{Aditional Tips} | ||
| + | |||
| + | <<>> | ||
| + | # let it commented | ||
| + | # purl(" | ||
| + | # system(" | ||
| + | @ | ||
| + | |||
| + | \end{document} | ||
| + | |||
| + | </ | ||
| + | |||
| + | Save the commands above into a file called report.rnw and compile it into a LaTeX document according to the commands below. | ||
| + | |||
| + | < | ||
| + | library(knitr) | ||
| + | knit(" | ||
| + | </ | ||
| + | |||
| + | This will generate a .tex file that can be processed by a LaTex editor! | ||
| + | |||
| + | For linux and mac users, you can run : | ||
| + | |||
| + | < | ||
| + | > tex2pdf report.tex | ||
| + | </ | ||
| + | |||
| + | to convert the result into a pdf | ||
| + | |||
